PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01262.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 281aa    MW: 31590.2 Da    PI: 5.4242
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01262.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41.1e-072192512254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  KHN01262.1 219 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 251
                 59*****************************87 PP

2ELK301.2e-10172193122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+ +++++++E++
  KHN01262.1 172 ELKHELKQGYKDKIVDIREEIL 193
                 9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-161660IPR005540KNOX1
PfamPF037904.8E-161856IPR005540KNOX1
SMARTSM012566.6E-2760115IPR005541KNOX2
PfamPF037911.7E-1964114IPR005541KNOX2
PfamPF037898.5E-6172193IPR005539ELK domain
PROSITE profilePS512139.969172192IPR005539ELK domain
SMARTSM011885.1E-4172193IPR005539ELK domain
PROSITE profilePS5007111.612192255IPR001356Homeobox domain
SMARTSM003891.2E-10194259IPR001356Homeobox domain
SuperFamilySSF466893.51E-16194258IPR009057Homeodomain-like
CDDcd000868.11E-12195256No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25199256IPR009057Homeodomain-like
PfamPF059206.7E-18212251IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDRNRTESNS EADDLAEYKA DILGHPLYDQ LLSAHVSCLR IATPVDQLPR IDAQLSGLGN  60
GNGVVDDKEL DQFMTHYVIL LCAFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVSPGE  120
GTGATMSDNE EDQAESNANL YEGGMDGADS LSFGPLVPTE TERSLMERVR QELKHELKQG  180
YKDKIVDIRE EILRKRRAGK LPGDTTSLLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ  240
INNWFINQRK RNWHTNPSSS SGSKSKRKSS GAGESSNQSF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12195259872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533879.20.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-158KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0B2P0S80.0A0A0B2P0S8_GLYSO; Homeobox protein knotted-1-like 3
STRINGGLYMA09G12820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-153KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]